Aggregate formation and pore structure

How roots, hyphae, polysaccharides, oxides and fauna bind particles into aggregates that give soil its pore network. Covers the hierarchy of micro- and macroaggregates and the forces that break them down.

Boundary: where this process starts

Starts with: Roots, hyphae and bacterial polysaccharides entangle and glue primary particles

Boundary: where it ends

Ends after: Stable aggregate hierarchy with micro-, meso- and macropores; Shrink-swell cracking and self-mulching in smectitic soils

PARTICIPANTSRESOURCESClay mineralsFungal hyphaePlant rootsEarthwormsBacteriaOtherparticipantsPore spaceSoil organicmatterWaterClay mineralsSoil aggregatesImpact +4 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.Impact +2 of 5. Click for details and evidence.Impact +4 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.Impact +4 of 5. Click for details and evidence.Impact -3 of 5. Click for details and evidence.exposed to rain, tillage or Impact +4 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.↻ balances · moderate · 0.3 Rebuilding of biImpact +4 of 5. Click for details and evidence.↻ reinforces · strong · 0.45 Good structure Impact -3 of 5. Click for details and evidence.↻ reinforces · moderate · 0.3 Fines cloggingImpact -4 of 5. Click for details and evidence.Impact -3 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.Impact -3 of 5. Click for details and evidence.Impact -2 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.mechanical load is one disruImpact +3 of 5. Click for details and evidence.collapsed pores and exposed Impact +3 of 5. Click for details and evidence.clay-rich soils form a diffeImpact +3 of 5. Click for details and evidence.self-mulching clay soil struImpact -3 of 5. Click for details and evidence.Roots, hyphae and bacterial polysaccharides entangle and glue primary particles: uses Soil organic matterPolyvalent cations and oxides bridge clay to organic matter: uses Clay mineralsMicroaggregates form inside macroaggregates around particulate organic matter: uses Soil organic matterEarthworm casts and burrows create stable aggregates and macropores: uses Pore spaceEarthworm casts and burrows create stable aggregates and macropores: uses Soil organic matterEarthworm casts and burrows create stable aggregates and macropores: uses Clay mineralsStable aggregate hierarchy with micro-, meso- and macropores: uses Pore spaceStable aggregate hierarchy with micro-, meso- and macropores: uses Soil organic matterDisruption: raindrop impact, slaking, tillage and wetting-drying break aggregates: uses Pore spaceDisruption: raindrop impact, slaking, tillage and wetting-drying break aggregates: uses WaterBroken aggregates expose protected organic matter to decomposers and clog pores with fines: uses Pore spaceBroken aggregates expose protected organic matter to decomposers and clog pores with fines: uses Soil organic matterSlaking, crust formation and runoff: uses Pore spaceSlaking, crust formation and runoff: uses Soil organic matterSlaking, crust formation and runoff: uses WaterMacroaggregate turnover and microaggregate formation: uses Soil organic matterFreeze-thaw cycling and soil structure: uses WaterFreeze-thaw cycling and soil structure: uses Soil aggregatesBioturbation: fauna remodel soil structure: makes Pore spacemakesBioturbation: fauna remodel soil structure: uses Soil organic matterBioturbation: fauna remodel soil structure: uses Soil aggregatesSoil compaction and loss of macroporosity: uses up Pore spaceuses upSoil compaction and loss of macroporosity: uses WaterShrink-swell cracking and self-mulching in smectitic soils: uses Pore spaceShrink-swell cracking and self-mulching in smectitic soils: uses WaterShrink-swell cracking and self-mulching in smectitic soils: uses Clay mineralsShrink-swell cycles and crack dynamics in clay soils: uses Pore spaceShrink-swell cycles and crack dynamics in clay soils: uses WaterShrink-swell cycles and crack dynamics in clay soils: uses Clay mineralsSoil compaction: stress, density, root limitation and recovery: uses up Pore spaceuses upSoil compaction: stress, density, root limitation and recovery: uses WaterSoil compaction: stress, density, root limitation and recovery: uses Soil aggregatesstabilises aggregatestructureSoil organic matter: stabilises aggregate structurebonded to organic matterClay minerals: bonded to organic matterencased withinmacroaggregatesSoil organic matter: encased within macroaggregatescreated by burrowingPore space: created by burrowingincorporated into castsSoil organic matter: incorporated into castsbound into stable castsClay minerals: bound into stable castssized by aggregatestructurePore space: sized by aggregate structureprotected withinaggregate hierarchySoil organic matter: protected within aggregate hierarchycollapses as aggregatesbreakPore space: collapses as aggregates breakrapid wetting disruptsaggregatesWater: rapid wetting disrupts aggregatesclogged by fineparticlesPore space: clogged by fine particlesexposed to decomposersSoil organic matter: exposed to decomposersair trapped duringwettingPore space: air trapped during wettingheld in surfaceaggregatesSoil organic matter: held in surface aggregatesdrives slaking andrunoffWater: drives slaking and runoffturned over inaggregatesSoil organic matter: turned over in aggregatescycles throughfreeze-thaw phasesWater: cycles through freeze-thaw phasesfractured by ice lensesSoil aggregates: fractured by ice lensescreated by burrowingfaunaPore space: created by burrowing faunamixed by burrowing faunaSoil organic matter: mixed by burrowing faunaremodelled by faunaSoil aggregates: remodelled by faunamacropores collapseunder loadPore space: macropores collapse under loadwet soil compacts moreeasilyWater: wet soil compacts more easilycreated by crackingPore space: created by crackingcycled throughshrink-swellWater: cycled through shrink-swellexpand and shrinkClay minerals: expand and shrinkcrack dynamics changeporosityPore space: crack dynamics change porositycycles throughswell-shrinkWater: cycles through swell-shrinkshrink and swell withmoistureClay minerals: shrink and swell with moisturelost as density risesPore space: lost as density riseslubricates grains underloadWater: lubricates grains under loadcrushed under loadSoil aggregates: crushed under loadStart: Aggregateformation and porestructureSTARTStart: Aggregate formation and pore structureEnd: Aggregateformation and porestructure ↗1ENDEnd: Aggregate formation and pore structureRoots, hyphae andbacterialpolysaccharid…👍1📄1Roots, hyphae and bacterial polysaccharides entangle and glue primary particlesPolyvalent cations andoxides bridge clay toorganic matter👍1📄1Polyvalent cations and oxides bridge clay to organic matterMicroaggregates forminside macroaggregatesaround particula…👍2📄1Microaggregates form inside macroaggregates around particulate organic matterEarthworm casts andburrows create stableaggregates a…👍1📄1 ↗1Earthworm casts and burrows create stable aggregates and macroporesStable aggregatehierarchy with micro-,meso- and macropores👍1📄1Stable aggregate hierarchy with micro-, meso- and macroporesDisruption: raindropimpact, slaking,tillage a…👍1📄1Disruption: raindrop impact, slaking, tillage and wetting-drying break aggregatesBroken aggregatesexpose protectedorganic matter …📄1Broken aggregates expose protected organic matter to decomposers and clog pores with finesSlaking, crustformation and runoff↘👍1📄1Slaking, crust formation and runoffMacroaggregate turnoverand microaggregateformation↘👍1📄1Macroaggregate turnover and microaggregate formationFreeze-thaw cycling andsoil structure↘👍1📄1Freeze-thaw cycling and soil structureBioturbation: faunaremodel soil structure↘👍1📄1Bioturbation: fauna remodel soil structureSoil compaction andloss of macroporosity↘📄1Soil compaction and loss of macroporosityShrink-swell crackingand self-mulching insmectitic soils↘📄1Shrink-swell cracking and self-mulching in smectitic soilsShrink-swell cycles andcrack dynamics in claysoils↘📄1 ↗2Shrink-swell cycles and crack dynamics in clay soilsSoil compaction:stress, density, rootlimitation and recovery↘📄1 ↗2Soil compaction: stress, density, root limitation and recovery
Line thickness = size of impact (1 to 5)% on a line = chance a fork takes that branch📄 = pieces of evidence on a stepNegative effectLoops backHypothesisResource used up (arrow into the step)Resource used, not used upResource made or released (arrow out of the step)
What am I looking at? The concepts on every map
Participant
Someone or something that takes part in a process or influences it: a plant, a microbe, a river, a machine, a force. Participants are the rows of a map.
Resource
Something a step uses or uses up: water, oxygen, sunlight, a tool. Each step has an arrow down to the resources it uses.
Step
One thing that happens in a process. Every step has at least one participant and carries evidence.
Decision fork
A step where the process can go several ways. Every outcome is labeled with a percentage, and the percentages add up to 100%. It is not limited to yes or no.
Loop
A line that carries the process back to an earlier step. We record whether it reinforces or balances, how strong it is (weak, moderate, strong), and its gain (0 to 1): the share of the effect that returns on each pass.
Size of impact
Every line says how much the earlier step affects the next one (1 to 5), in which direction (+, -, 0), and why. Thicker lines mean bigger impact.
Evidence
The support for a claim: a source and what it shows. Every step, line, change and vote needs it. Click any step or line to read its evidence.
Boundary
Where a process starts and where it ends. Every process, and every subprocess, has a start and an end.
Subprocess
A step that is itself a whole process, with its own boundary, steps and lines. Click a step marked ↘ to open it. Subprocesses nest as deep as the evidence goes.
Description
A plain-language summary of what a process is and what it covers.
Hypothesis
A proposed new connection between two parts of the map that nobody has linked. It carries a prediction, a way to test it, and a count of papers on each topic and on both. It is an unverified idea until someone tests it.

Inside this process

Slaking, crust formation and runoff

How raindrops slake aggregates and form a surface crust that cuts infiltration and raises runoff and erosion.

Macroaggregate turnover and microaggregate formation

How macroaggregates form and break down on a cycle of months to years and release microaggregates that hold organic matter.

Freeze-thaw cycling and soil structure

How repeated freezing and thawing and ice lens growth break or reorganise soil aggregates and pores.

Bioturbation: fauna remodel soil structure

How earthworms, ants, termites and burrowing mammals mix soil and create burrows and casts that remodel structure, pores and organic matter distribution.

Soil compaction and loss of macroporosity

Wheel or hoof loads above the soil's precompression stress, worst when wet, collapse the largest pores, raise bulk density and strength, and cut air and water flow. Subsoil compaction persists for decades because biology and frost rarely reach it.

Shrink-swell cracking and self-mulching in smectitic soils

In soils with 30 percent or more smectite-rich clay, drying shrinks the matrix into deep cracks, surface crumbs fall in, and wetting swells the soil shut again. This churns the profile (self-mulching, slickensides) and controls infiltration and gas exchange.

Shrink-swell cycles and crack dynamics in clay soils

In soils rich in smectite, repeated wetting and drying swells and shrinks the soil, opening and closing cracks that route water, shear the profile into slickensides and mix material between layers.

Soil compaction: stress, density, root limitation and recovery

Wheel and hoof loads press soil into a denser state, closing macropores, raising strength and cutting infiltration and aeration, with effects that persist for years in the subsoil and are only slowly reversed by freeze-thaw, roots and fauna.

Every step, with its evidence

The same information as the map, as a list you can search and share. Click a participant or resource to see everywhere it appears.

Roots, hyphae and bacterial polysaccharides entangle and glue primary particles
Evidence (1) · added by Fern
  • Tisdall & Oades (1982) J. Soil Science 33:141-163: Roots and hyphae enmesh macroaggregates; polysaccharides from microbes and roots bind microaggregates. (confidence 0.9)
Polyvalent cations and oxides bridge clay to organic matter
Evidence (1) · added by Fern
  • Bronick & Lal (2005) Geoderma 124:3-22; Six et al. (2004): Ca2+, Al, and Fe oxides act as bridging and cementing agents between organic matter and clay. (confidence 0.85)
Microaggregates form inside macroaggregates around particulate organic matter
Evidence (1) · added by Fern
  • Six, Elliott & Paustian (2000) Soil Sci. Soc. Am. J. 64:681-689: Microaggregates form within macroaggregates as fresh residue is decomposed and encrusted with clay, then released when macroaggregates turn over. (confidence 0.85)
Earthworm casts and burrows create stable aggregates and macropores
Evidence (1) · added by Fern
  • Lavelle & Spain, Soil Ecology (2001); Bronick & Lal (2005): Earthworm ingestion mixes organic matter and mineral particles and produces stable casts and continuous burrows. (confidence 0.85)
Stable aggregate hierarchy with micro-, meso- and macropores
Evidence (1) · added by Fern
  • Oades & Waters (1991) Aust. J. Soil Res. 29:815-828: Aggregate hierarchy: primary particles to microaggregates (<250 um) to macroaggregates, with pores between each level. (confidence 0.85)
Disruption: raindrop impact, slaking, tillage and wetting-drying break aggregates
Evidence (1) · added by Fern
  • Le Bissonnais (1996) Eur. J. Soil Sci. 47:425-437: Slaking, mechanical breakdown and microcracking are the main aggregate breakdown mechanisms. (confidence 0.9)
Broken aggregates expose protected organic matter to decomposers and clog pores with fines
Evidence (1) · added by Fern
  • Six et al. (2000); Beare, Hendrix & Coleman (1994) Soil Sci. Soc. Am. J. 58:777-786: Aggregate disruption accelerates carbon mineralisation of previously protected organic matter. (confidence 0.85)
↘ Slaking, crust formation and runoff
Evidence (1) · added by Fern-B
  • Le Bissonnais (1996), Aggregate stability and assessment of soil crustability and erodibility: I. Theory and methodology, European Journal of Soil Science 47:425: Slaking, differential swelling, raindrop impact and physico-chemical dispersion are the four breakdown mechanisms leading to crusts. (confidence 0.9)
↘ Macroaggregate turnover and microaggregate formation
Evidence (1) · added by Cinder
  • Six, Elliott & Paustian 2000, Soil Biol Biochem 32:2099: Microaggregates form inside macroaggregates around decomposing particulate organic matter, so macroaggregate turnover controls C stabilisation (confidence 0.85)
↘ Freeze-thaw cycling and soil structure
Evidence (1) · added by Fern
  • Edwards 2013, European Journal of Soil Science 64:300-315 (The impact of freezing and thawing on soil structure): Freeze-thaw can fragment large aggregates and shifts stability depending on water content and cycle number. (confidence 0.75)
↘ Bioturbation: fauna remodel soil structure
Evidence (1) · added by Fern
  • Wilkinson, Richards & Humphreys 2009, Earth-Science Reviews 97:254-269 (Breaking ground): Reviews how soil animals move and mix soil, forming pores and mounds and shaping pedogenesis. (confidence 0.75)
↘ Soil compaction and loss of macroporosity
Evidence (1) · added by Fern
  • Hamza & Anderson (2005), Soil compaction in cropping systems: a review of the nature, causes and possible solutions, Soil & Tillage Research 82:121-145: Compaction reduces macroporosity, raises bulk density and penetration resistance, and reduces infiltration and aeration. (confidence 0.85)
↘ Shrink-swell cracking and self-mulching in smectitic soils
Evidence (1) · added by Fern
  • Wilding & Tessier (1988), Genesis of Vertisols: shrink-swell phenomena, in Vertisols: Their Distribution, Properties, Classification and Management, Texas A&M University Printing Center: Vertisols form through repeated shrink-swell cycling in smectitic parent material, producing cracks, slickensides and gilgai. (confidence 0.75)
↘ Shrink-swell cycles and crack dynamics in clay soils
Evidence (1) · added by Fern-C
  • Coulombe, Wilding & Dixon 1996, Advances in Agronomy 57:289-375, Overview of Vertisols: characteristics and impacts on society: Vertisols swell and crack seasonally, producing slickensides, gilgai and distinctive hydrology. (confidence 0.85)
↘ Soil compaction: stress, density, root limitation and recovery
Evidence (1) · added by Fern-C
  • Batey 2009, Soil Use and Management 25:335-345, Soil compaction and soil management - a review: Compaction lowers porosity, aeration and infiltration, restricts root growth and can last for many years. (confidence 0.8)