Nutrient availability and leaching

How nutrients are held, released, taken up and lost in soil. Covers mineralisation, nitrification, phosphate sorption, immobilisation, nitrate leaching and denitrification, and atmospheric inputs.

Boundary: where this process starts

Starts with: Nutrient pools: mineral, organic matter, exchangeable, and soil solution

Boundary: where it ends

Ends after: Roots and mycorrhizal hyphae take up nutrients by diffusion and mass flow; Nitrate and base cations leach with drainage water to groundwater and streams

PARTICIPANTSRESOURCESPlant rootsSoil solutionDrainage waterMicrobesMycorrhizalfungiOtherparticipantsNitrateNitrogenPhosphorusPotassiumWaterImpact 03 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.fixed N enters organic poolImpact +2 of 5. Click for details and evidence.deposited N and SImpact +2 of 5. Click for details and evidence.Impact +1 of 5. Click for details and evidence.Impact +4 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.ammonium oxidised if aerobicImpact -3 of 5. Click for details and evidence.phosphate meets oxidesImpact +4 of 5. Click for details and evidence.Impact -3 of 5. Click for details and evidence.competition by microbesImpact 03 of 5. Click for details and evidence.Impact +4 of 5. Click for details and evidence.50% taken up by roots and hyImpact -3 of 5. Click for details and evidence.10% anaerobic micrositesImpact -2 of 5. Click for details and evidence.10% immobilised by microbesImpact +2 of 5. Click for details and evidence.slow desorption and diffusioImpact +4 of 5. Click for details and evidence.Impact -4 of 5. Click for details and evidence.Impact -3 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.↻ balances · moderate · 0.5 Immobilised nutrImpact +3 of 5. Click for details and evidence.↻ reinforces · moderate · 0.25 Roots exude cImpact -2 of 5. Click for details and evidence.↻ reinforces · weak · 0.1 Leaching of base cImpact -1 of 5. Click for details and evidence.↻ balances · weak · 0.1 Nitrification acidifImpact +3 of 5. Click for details and evidence.exchangeable and mineral catImpact +3 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.organic and mineral S poolsImpact +3 of 5. Click for details and evidence.Impact +3 of 5. Click for details and evidence.leached nitrate is traced thImpact +3 of 5. Click for details and evidence.nitrate exported from the roImpact +3 of 5. Click for details and evidence.micronutrient pools are heldImpact +3 of 5. Click for details and evidence.micronutrient availability sNutrient pools: mineral, organic matter, exchangeable, and soil solution: uses NitrogenNutrient pools: mineral, organic matter, exchangeable, and soil solution: uses PhosphorusNutrient pools: mineral, organic matter, exchangeable, and soil solution: uses PotassiumMicrobial mineralisation of organic N and P releases Ammonium and phosphate: uses up Phosphorususes upNitrification converts Ammonium to Nitrate: makes NitratemakesPhosphate sorbed to Fe and Al oxides, precipitated with Ca at high pH: uses up Phosphorususes upRoots and mycorrhizal hyphae take up nutrients by diffusion and mass flow: uses up Nitrateuses upRoots and mycorrhizal hyphae take up nutrients by diffusion and mass flow: uses up Phosphorususes upRoots and mycorrhizal hyphae take up nutrients by diffusion and mass flow: uses up Potassiumuses upRoots and mycorrhizal hyphae take up nutrients by diffusion and mass flow: uses WaterMicrobes immobilise nutrients into biomass when substrate is C-rich: uses up Nitrogenuses upMicrobes immobilise nutrients into biomass when substrate is C-rich: uses up Phosphorususes upNitrate fate: uses NitrateNitrate fate: uses WaterNitrate and base cations leach with drainage water to groundwater and streams: uses NitrateNitrate and base cations leach with drainage water to groundwater and streams: uses PotassiumNitrate and base cations leach with drainage water to groundwater and streams: uses WaterDenitrification returns nitrate to N2 and N2O: uses up Nitrateuses upDenitrification returns nitrate to N2 and N2O: makes NitrogenmakesBiological N fixation adds new N: makes NitrogenmakesAtmospheric deposition of N and S: uses NitrogenBase cation cycling (calcium, magnesium, potassium, sodium): uses PotassiumNitrate leaching from the root zone to groundwater and coastal waters: uses up Nitrateuses upNitrate leaching from the root zone to groundwater and coastal waters: uses Waterpartitioned among poolsNitrogen: partitioned among poolspartitioned among poolsPhosphorus: partitioned among poolsheld in exchangeablepoolPotassium: held in exchangeable poolreleased from organicmatterPhosphorus: released from organic matterformed by nitrifiersNitrate: formed by nitrifiersfixed onto oxidesurfacesPhosphorus: fixed onto oxide surfacestaken up by rootsNitrate: taken up by rootsdelivered to roots bydiffusionPhosphorus: delivered to roots by diffusiontransported to rootsPotassium: transported to rootscarries nutrients torootsWater: carries nutrients to rootslocked into microbialcellsNitrogen: locked into microbial cellsimmobilized in microbialcellsPhosphorus: immobilized in microbial cellsmoves with soil waterNitrate: moves with soil watertransports nitrateWater: transports nitrateleached with drainageNitrate: leached with drainageleached with drainagePotassium: leached with drainagecarries leached solutesWater: carries leached solutesreduced to gasesNitrate: reduced to gasesreturned as gasNitrogen: returned as gasadded as new nitrogenNitrogen: added as new nitrogendeposited from airNitrogen: deposited from aircycled through plant andsoilPotassium: cycled through plant and soilleaches to groundwaterand coastsNitrate: leaches to groundwater and coastscarries nitrate downwardWater: carries nitrate downwardStart: Nutrientavailability andleachingSTARTStart: Nutrient availability and leachingEnd: Nutrientavailability andleaching ↗1ENDEnd: Nutrient availability and leachingNutrient pools:mineral, organicmatter, exchangeabl…👍1📄1Nutrient pools: mineral, organic matter, exchangeable, and soil solutionMicrobialmineralisation oforganic N and…👍1📄1Microbial mineralisation of organic N and P releases Ammonium and phosphateNitrification convertsAmmonium to Nitrate👍1📄1Nitrification converts Ammonium to NitratePhosphate sorbed to Feand Al oxides,precipitated with Ca …👍1📄1Phosphate sorbed to Fe and Al oxides, precipitated with Ca at high pHRoots and mycorrhizalhyphae take upnutrients by diffusi…👍1📄1Roots and mycorrhizal hyphae take up nutrients by diffusion and mass flowMicrobes immobilisenutrients into biomasswhen substrate …📄1Microbes immobilise nutrients into biomass when substrate is C-richNitrate fate📄1Nitrate fateNitrate and basecations leach withdrainage water …👍1📄1Nitrate and base cations leach with drainage water to groundwater and streamsDenitrification returnsnitrate to N2 and N2O👍1📄1Denitrification returns nitrate to N2 and N2OBiological N fixationadds new N👍1📄1Biological N fixation adds new NAtmospheric depositionof N and S👍1📄1 ↗1Atmospheric deposition of N and SSoil sulfur cycling↘📄1 ↗2Soil sulfur cyclingBase cation cycling(calcium, magnesium,potassium, sodium)↘📄1 ↗2Base cation cycling (calcium, magnesium, potassium, sodium)Nitrate leaching fromthe root zone togroundwater and coast…↘📄1Nitrate leaching from the root zone to groundwater and coastal watersMicronutrientavailability: pH, redoxand plant mobilisati…↘📄1Micronutrient availability: pH, redox and plant mobilisation of Fe and Zn
Line thickness = size of impact (1 to 5)% on a line = chance a fork takes that branch📄 = pieces of evidence on a stepNegative effectLoops backHypothesisResource used up (arrow into the step)Resource used, not used upResource made or released (arrow out of the step)
What am I looking at? The concepts on every map
Participant
Someone or something that takes part in a process or influences it: a plant, a microbe, a river, a machine, a force. Participants are the rows of a map.
Resource
Something a step uses or uses up: water, oxygen, sunlight, a tool. Each step has an arrow down to the resources it uses.
Step
One thing that happens in a process. Every step has at least one participant and carries evidence.
Decision fork
A step where the process can go several ways. Every outcome is labeled with a percentage, and the percentages add up to 100%. It is not limited to yes or no.
Loop
A line that carries the process back to an earlier step. We record whether it reinforces or balances, how strong it is (weak, moderate, strong), and its gain (0 to 1): the share of the effect that returns on each pass.
Size of impact
Every line says how much the earlier step affects the next one (1 to 5), in which direction (+, -, 0), and why. Thicker lines mean bigger impact.
Evidence
The support for a claim: a source and what it shows. Every step, line, change and vote needs it. Click any step or line to read its evidence.
Boundary
Where a process starts and where it ends. Every process, and every subprocess, has a start and an end.
Subprocess
A step that is itself a whole process, with its own boundary, steps and lines. Click a step marked ↘ to open it. Subprocesses nest as deep as the evidence goes.
Description
A plain-language summary of what a process is and what it covers.
Hypothesis
A proposed new connection between two parts of the map that nobody has linked. It carries a prediction, a way to test it, and a count of papers on each topic and on both. It is an unverified idea until someone tests it.

Inside this process

Every step, with its evidence

The same information as the map, as a list you can search and share. Click a participant or resource to see everywhere it appears.

Nutrient pools: mineral, organic matter, exchangeable, and soil solution
Evidence (1) · added by Fern
  • Brady & Weil, ch. on nutrient cycles; Marschner (2012): Most nutrients are in slowly available mineral and organic pools; only a small fraction is in solution at a time. (confidence 0.9)
Microbial mineralisation of organic N and P releases Ammonium and phosphate
Evidence (1) · added by Fern
  • Schimel & Bennett (2004) Ecology 85:591-602; Paul (2015): Microbes depolymerise organic N and release inorganic N when C:N of substrate is below about 25:1; phosphatases release P. (confidence 0.85)
Nitrification converts Ammonium to Nitrate
Evidence (1) · added by Fern
  • Prosser & Nicol (2012) Trends in Microbiology 20:523-531; Brady & Weil: Ammonia oxidisers and nitrite oxidisers convert NH4 to NO3 under aerobic conditions, releasing H+. (confidence 0.9)
Phosphate sorbed to Fe and Al oxides, precipitated with Ca at high pH
Evidence (1) · added by Fern
  • Hinsinger (2001); Brady & Weil, ch. on phosphorus: P availability is maximal near pH 6-7; below it P binds to Fe and Al, above it to Ca. (confidence 0.9)
Roots and mycorrhizal hyphae take up nutrients by diffusion and mass flow
Evidence (1) · added by Fern
  • Smith & Read, Mycorrhizal Symbiosis (3rd ed., 2008); Barber, Soil Nutrient Bioavailability (1995): Nitrate moves by mass flow, P and K by diffusion; mycorrhizal hyphae extend the depletion zone and supply P and N to the plant. (confidence 0.9)
Microbes immobilise nutrients into biomass when substrate is C-rich
Evidence (1) · added by Fern
  • Hodge, Robinson & Fitter (2000) Trends in Plant Science 5:304-308; Brady & Weil: Microbes compete with plants for inorganic N; high C:N residue causes net immobilisation. (confidence 0.85)
⑂ Nitrate fate
Evidence (1) · added by Fern
  • Galloway et al. (2004) Biogeochemistry 70:153-226; Brady & Weil: Nitrate not taken up is lost by leaching or denitrification; proportions depend on drainage and anaerobic microsites. (confidence 0.8)
Nitrate and base cations leach with drainage water to groundwater and streams
Evidence (1) · added by Fern
  • Di & Cameron (2002) Nutrient Cycling in Agroecosystems 64:237-256: Nitrate is mobile because anions are not retained by negatively charged soil, so it leaches with drainage. (confidence 0.9)
Denitrification returns nitrate to N2 and N2O
Evidence (1) · added by Fern
  • Firestone & Davidson (1989) in Andreae & Schimel (eds.), Exchange of Trace Gases between Terrestrial Ecosystems and the Atmosphere: Denitrification occurs under low oxygen with available carbon and nitrate. (confidence 0.9)
Biological N fixation adds new N
Evidence (1) · added by Fern
  • Vitousek et al. (2013) Ecological Applications 23:1-6; Brady & Weil: Symbiotic and free-living fixers add reactive N, costing the host carbon. (confidence 0.9)
Atmospheric deposition of N and S
Evidence (1) · added by Fern
  • Galloway et al. (2004): Atmospheric N deposition is a significant input in many regions. (confidence 0.8)
↘ Soil sulfur cycling
Evidence (1) · added by Cinder-B
  • Brady & Weil, The Nature and Properties of Soils, 15th ed. (2016), chapter on soil nitrogen and sulfur: Soil S cycle has organic, adsorbed, solution and reduced pools linked by mineralization, immobilization, oxidation and reduction. (confidence 0.85)
↘ Base cation cycling (calcium, magnesium, potassium, sodium)
Evidence (1) · added by Cinder-B
  • Likens et al. 1998, The biogeochemistry of calcium at Hubbard Brook, Biogeochemistry 41:89-173: Ca budget of a forested watershed combines weathering and deposition inputs, plant and exchange pools, and stream export. (confidence 0.85)
↘ Nitrate leaching from the root zone to groundwater and coastal waters
Evidence (1) · added by Fern
  • Di & Cameron (2002), Nitrate leaching in temperate agroecosystems: sources, factors and mitigating strategies, Nutrient Cycling in Agroecosystems 64:237-256: Nitrate leaching depends on soil nitrate at the start of drainage and on drainage volume, and cover crops and timing of N supply reduce it. (confidence 0.85)
↘ Micronutrient availability: pH, redox and plant mobilisation of Fe and Zn
Evidence (1) · added by Fern
  • Lindsay (1979), Chemical Equilibria in Soils, Wiley: Fe3+ activity from oxide solubility falls 1000-fold per unit pH rise; Zn2+, Cu2+ and Mn2+ fall about 100-fold per pH unit. (confidence 0.8)